U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX1299766: "Angelo meadow plot 1, 20cm depth, 6 days after first rain event (27mm)"
1 ILLUMINA (Illumina HiSeq 2000) run: 47.9M spots, 24G bases, 13.8Gb downloads

Design: untrimmed demultiplexed raw reads from field samples collected from Angelo meadow
Submitted by: UNIVERSITY OF CALIFORNIA, BERKELEY
Study: Meadow Soil samples from Angelo, CA Genome sequencing and assembly
show Abstracthide Abstract
Methylotrophy and archaeal heterotrophy dominate carbon turnover below the grass root zoneAnnually, half of all plant-derived carbon is added to soil; most is rapidly respired to CO2 but some is exported to sustain life in lower horizons and the deeper biosphere. Little is known about the microbial communities that respond to these carbon pulses and the biochemical pathways involved. We found that bacterial degradation of methyl compounds was pronounced below the grass root zone in the Fall rainy season. This process limits supply of methyl compounds for methanogenesis in the deeper subsurface. Archaea, which comprised ~20% of microbial communities in deeper soil, degrade organic carbon, including aromatic compounds. Populations display dandelion-like patterns of diversity, and many affiliate with largely unknown bacterial and archaeal phyla, underlining the roles of novel organisms in soil carbon cycling.
Sample:
SAMN04116730 • SRS1096865 • All experiments • All runs
Organism: soil metagenome
Library:
Name: WGS_13_1_20cm_3
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward252  reverse

Runs: 1 run, 47.9M spots, 24G bases, 13.8Gb
Run# of Spots# of BasesSizePublished
SRR254642347,859,96024G13.8Gb2015-10-05

ID:
1856639

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...